NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157572_1166486

Scaffold Ga0157572_1166486


Overview

Basic Information
Taxon OID3300012703 Open in IMG/M
Scaffold IDGa0157572_1166486 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1767
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054566Metagenome / Metatranscriptome139N
F055421Metagenome / Metatranscriptome138N
F055422Metagenome / Metatranscriptome138N
F062460Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0157572_11664862F054566AGGMEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKIKQTNKDAN*
Ga0157572_11664863F055421N/AMEEFTNPYKETNIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPNGEEIESNLIKLTIGY*
Ga0157572_11664865F055422AGGMNNWRFRRRTFPLTRRETHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILVTRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETEPLITEV*
Ga0157572_11664866F062460N/AMNLEKSIIQAVTTAVKEIRQESCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRSISHE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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