NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157595_1127064

Scaffold Ga0157595_1127064


Overview

Basic Information
Taxon OID3300012708 Open in IMG/M
Scaffold IDGa0157595_1127064 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES113 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F051068Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0157595_11270641F002162N/AMPNYDYMCDGEGLLIVLDLPMDHKIPHCQVCNAPLR
Ga0157595_11270642F051068N/AETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVDQIGSAIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPNWATLTANGKWYFKGGE*

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