NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157607_1071558

Scaffold Ga0157607_1071558


Overview

Basic Information
Taxon OID3300012711 Open in IMG/M
Scaffold IDGa0157607_1071558 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1603
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004777Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0157607_10715583F004777N/AMGVSGTGRPIYSFDAALGSHVSRNAPLSGYASVTVSGLNFGLGEHSATAGLEQGGEGDLGVCFTSSWTSATTLACLSDPVGDIFGSASVTIAYVSGTARPIFSFDAAVVSDVQRNAPHSGYASLTISGLDFGVGEHTATAGIENGGAGDVGVCFTSSWLSATTLACLSDPLGDIFKIATVTVASVSGTGKPIFSFDAPASSFTLQPNLAMSGGYSVTVSG
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