NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157600_1142597

Scaffold Ga0157600_1142597


Overview

Basic Information
Taxon OID3300012719 Open in IMG/M
Scaffold IDGa0157600_1142597 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES123 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)922
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F045058Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0157600_11425971F000450AGGCGGMGDRANFGFVQPNGQTIVLYGHWAGNQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFSQQTFSLHEEAPRNDLDNKVNGMSNEALFTMDLSNFVEKYADVTISV*
Ga0157600_11425973F001043AGGAGMSDYKDGFQDGYKFGREELMGKLREIDINDIDSWILDRLSDMIEGGKL*
Ga0157600_11425974F045058N/AAYWDAQMIGLDPQAMSALTFNVGTGSIEKVSRIRDKHGLTESYVSNYEPTGYTRR*
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