NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157613_1184450

Scaffold Ga0157613_1184450


Overview

Basic Information
Taxon OID3300012720 Open in IMG/M
Scaffold IDGa0157613_1184450 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES141 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053139Metagenome / Metatranscriptome141N
F057194Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0157613_11844501F057194N/AMATTVLSGSPQVATPVYNKMLFKVSSDQIAQPNYRFVCDVKDSAGSTYARLKCDKLPITNQGFFDVAKVVETLIAPTKPTLTQTAFSNHS
Ga0157613_11844502F053139N/AAIMANPYWKYVDQGVHGRTSSYISARDSKFRYENKIPPPQAIADWIANKEIAVTPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVEGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL*
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