NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157531_1127080

Scaffold Ga0157531_1127080


Overview

Basic Information
Taxon OID3300012727 Open in IMG/M
Scaffold IDGa0157531_1127080 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES016 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1103
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0157531_11270801F001219N/ALTFAAEAVLFIILALVVTFGFISPISKQLDERADFINYTLRKSTILLTLGYEKLINSVGLLTEEIGEMNRQMKLTRSYVNSQFENEVLSAQKENSLLLSKLKGNLSIKSAYLFSNLSKDLVTITDKFFDKKFQSNS*
Ga0157531_11270802F001145N/AMTWDFVSFFLNSEEAFIELNPNILETNIINIGLLVGILLYANKVSFSVGLENRQKEIVQTIENAQKDVVKTSNYYYLAEKGLTQSLFWLQSWKALYEKDKVDLVNTKYKLVKTGLTEAFATTENLVKVFENKSFLSLQRYIIFITASKILRKFLFLSEKEQSKLIETKISSLGGKN*
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