NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157602_1242474

Scaffold Ga0157602_1242474


Overview

Basic Information
Taxon OID3300012730 Open in IMG/M
Scaffold IDGa0157602_1242474 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES126 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F019949Metagenome / Metatranscriptome226N
F028417Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0157602_12424741F019949N/ASTAEDEAIKEILREELEKSIDKSVVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKMHNLSPLQKARKFSKIYELKQKITQINLNWKISDSFHLKKYKILTLIDKIDVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIRKIE*
Ga0157602_12424742F028417AGGAMATNESLDNKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQDLKFKFINSYNDYIFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPSWKINPTSIIEFINSTLSASARK*
Ga0157602_12424743F016494N/AMSQKDNDSEEIARDNFTELTQLVKSTLQTVDELFPPKPEFSFEDMMIQFYTLKSRIKKIDPSWKFENTDTSYVFEILKLLDAINIEEIPDLQQNAKICQRLLHRVRIMRQ
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