Scaffold Ga0157606_1235609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157606_1235609

Scaffold Ga0157606_1235609

Overview

Basic Information
Taxon OID	3300012733 Open in IMG/M
Scaffold ID	Ga0157606_1235609 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2593
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058729	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157606_12356091	F058729	N/A	KKVLLSLTAAAAFVFAAGTVNAQVNGPITGKTQVVQANANLQAEILVTIPSPGADGGAVRFGTVPRNSSINMDPRAVASTNLGFSSAPAMVSITSQPDEPLRIEYPSAVLLSNNTSGTLSYITYRPQISALNDHVALTATNREASKYLGTTNPGRDQVTADGGTGEGNTATSAVNGYVVMSPFTTGAGKVTLFVGGKLYDGAANTPNISTNIPNTKQVGFYDGEFTLNILYLN*

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