NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157606_1262849

Scaffold Ga0157606_1262849


Overview

Basic Information
Taxon OID3300012733 Open in IMG/M
Scaffold IDGa0157606_1262849 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12885
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028149Metagenome / Metatranscriptome192N
F085631Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0157606_126284918F028149AGGAGMAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGSWENPTGASCSGQPCDPTENKIGWGWTRNTYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGSLAGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAAAITAASLGKLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFNKVDRGCVEIIPVCEADPGNPAQSYNSADPVCGVVVQFTAVPNDAGNYVIGTTGIMCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNLIQLAGSALGTTTEVVPCTNVTLEFAI*
Ga0157606_126284919F085631N/AMKNTIRVSYRLPIEVAQMLEEEAIRSRRTKTAVLIIAIEDHVMRSAIKKPVDTRKTR*
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