Basic Information | |
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Taxon OID | 3300012749 Open in IMG/M |
Scaffold ID | Ga0157566_1100367 Open in IMG/M |
Source Dataset Name | Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES066 metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 630 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021930 | Metagenome / Metatranscriptome | 216 | N |
F088321 | Metagenome / Metatranscriptome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157566_11003671 | F021930 | N/A | MSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAAQLSEIEYIISRQSLEQM |
Ga0157566_11003672 | F088321 | N/A | ASDKLRVQISNLIKQEFAKSQNLRARMSKIHSSIKINQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI* |
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