Scaffold Ga0138277_1088748

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138277_1088748

Scaffold Ga0138277_1088748

Overview

Basic Information
Taxon OID	3300012751 Open in IMG/M
Scaffold ID	Ga0138277_1088748 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada - M_130821_E_mt (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1071
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138277_10887482	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGMANKFPNFKFKVGEQEIVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPSDEVKPDTSFNPDELESQLQQVAKDFDADLTIETKKPFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN*

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