NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138270_1119781

Scaffold Ga0138270_1119781


Overview

Basic Information
Taxon OID3300012771 Open in IMG/M
Scaffold IDGa0138270_1119781 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada - C_130625_E_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004995Metagenome / Metatranscriptome415Y

Sequences

Protein IDFamilyRBSSequence
Ga0138270_11197811F004995N/ALLVHKVVVSYDKQRNKFIFKRTLPVSAENYSVYIKIINSEDFLGFYKSDRNVEILLPYLQNIYSNNIVNILGDECIIIKVNGDCILAGNTVDNFGTETYEPSNIIFMMPINVPSNGLLEYNNEDGGDSFQYRLANNEQITWFTLTILNQDNELIPNFSDYILMLQFIRHKTEEGKLETLLNTLIDYVKQIYLLISHVLFPSMN*
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