Basic Information | |
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Taxon OID | 3300012771 Open in IMG/M |
Scaffold ID | Ga0138270_1223766 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada - C_130625_E_mt (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1946 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Quebec | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001145 | Metagenome / Metatranscriptome | 765 | Y |
F001219 | Metagenome / Metatranscriptome | 744 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0138270_12237662 | F001145 | N/A | MNWNFFSFFLTSEESFIEFNTNILETNLINIFLLIGLLLYANKVSFSGTLQNRQKDIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKSLYDKEKVEIVNNKYKTVKTALTETFSTTESLIKNFENKTFLSLQRYIVLVTASKILRKFFFLSEKEQSKLIELTISKLGGFNK* |
Ga0138270_12237663 | F001219 | N/A | MNFPITFFINANGLFDFDITFPTEALLFLILATVVTFVFLSPVSKQIDERSEFINYTLRKSTILLTFGYEKLSKCVGLLTEEIDEMNRQIKLVKNYTNLKFEDEIIFIQKENLKILSELKGDLAIKSAYVFSNLTSDLTSLADKFFTKKFQSVS* |
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