NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138290_1188671

Scaffold Ga0138290_1188671


Overview

Basic Information
Taxon OID3300012773 Open in IMG/M
Scaffold IDGa0138290_1188671 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada - S_140212_E_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15577
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (43.48%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006262Metagenome / Metatranscriptome377Y

Sequences

Protein IDFamilyRBSSequence
Ga0138290_11886711F006262N/AFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVDYLEQDGIITPTDAQIYTKMVAVVLVAATSFGGDFSNFRREASYRMGMS*
Ga0138290_118867114F005024GGGGGVKFGVNMTVDSSKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGAPAGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTVNLNGGHGLYGKAMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETTEMINHMTEALLANGKVLEDNGISIK*
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