Scaffold Ga0126335_1002434

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126335_1002434

Scaffold Ga0126335_1002434

Overview

Basic Information
Taxon OID	3300012887 Open in IMG/M
Scaffold ID	Ga0126335_1002434 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Olavius sp. 1 OAHU.JWI-45 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11129
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Hawaii
Coordinates	Lat. (^o)	21.4686	Long. (^o)	-157.8184	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054627	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126335_10024343	F054627	GGA	MEFPFAELNEVNSTEAAVGQVESLYSRKPALAVPYVGVLGVAAVVGTFGNLVVIMTVIVKYFCSRRQRAGTTRNDAGRVVIANLALSDLIVTAIINPLAVAGL*

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