NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160429_1049317

Scaffold Ga0160429_1049317


Overview

Basic Information
Taxon OID3300012888 Open in IMG/M
Scaffold IDGa0160429_1049317 Open in IMG/M
Source Dataset NameSolar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Source Dataset Sampling Location
Location NameUSA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
CoordinatesLat. (o)37.876387Long. (o)-122.246777Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059667Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0160429_10493171F059667N/AKCNEKNLFNVALFTEKPPQMNSTISCPTQGIALIKLVITVAPHKLICP*
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