Scaffold Ga0160428_1254654

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0160428_1254654

Scaffold Ga0160428_1254654

Overview

Basic Information
Taxon OID	3300012890 Open in IMG/M
Scaffold ID	Ga0160428_1254654 Open in IMG/M
Source Dataset Name	Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	628
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Source Dataset Sampling Location
Location Name	USA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
Coordinates	Lat. (^o)	37.876387	Long. (^o)	-122.246777	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046195	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160428_12546543	F046195	GGA	MKVSRRWIEWAHGPGAEDGQPLAMSLCDLASAPGVGSIEVADPVLLAELVDVAGLYVNPCRGDALHDMGPWWMGQPRRIISAGRASLRSANSAAKSPTVAGQPE*

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