NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157303_10015539

Scaffold Ga0157303_10015539


Overview

Basic Information
Taxon OID3300012896 Open in IMG/M
Scaffold IDGa0157303_10015539 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007042Metagenome / Metatranscriptome359Y
F030490Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0157303_100155392F030490AGGVLQGHLERLGVSSFWLRSALDAIRYCEQGDFFQPVFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLDLYWSEDNPSVRPDLDEAFRDMVTFAEGELPEATPAQHEDARHRRWALGSAGYVWRVAESTARTSDLDLRAALEKEVEAVVESFPKAEPEDRFLAWAATECVNRNLLFGSASPGGWASGGEFLRRGFRFAERHVFSEDVTLPLKDQWYAFSFGVALYDVDAFLATRPPRRISRREGQLTV*
Ga0157303_100155393F007042N/ALEGAKMLMFVNRETGKGLGVTLFESEEAMRRGDEALNAMNPGGTERRTSVEFYEVPVQTVS*
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