NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157308_10223168

Scaffold Ga0157308_10223168


Overview

Basic Information
Taxon OID3300012910 Open in IMG/M
Scaffold IDGa0157308_10223168 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005363Metagenome / Metatranscriptome403Y
F019917Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0157308_102231681F005363N/AASALAIFDGTHASLEFLNVATKEVDLAFSGDIDFENTKYVVVRIAAATPIFDLMSHPVECVNKIEITPTALPLAPAATELEFRGPLLGSDWSVSLKEEINGQFSIVPTPDGAERIFPVCLGAGPEEKALLLGAIPRAEVGPKENQKKGEKRQ*
Ga0157308_102231682F019917N/AELRQVRNILVSSPGCHSVQLLFDRGNGSSLRLDAGTEFRVNLTSDLTEKLSRWLVPGQHQ
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