NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137395_10000476

Scaffold Ga0137395_10000476


Overview

Basic Information
Taxon OID3300012917 Open in IMG/M
Scaffold IDGa0137395_10000476 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16700
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000532Metagenome / Metatranscriptome1046Y
F017372Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0137395_1000047611F000532AGGVALIKKRLGIEAVVTPGKTGQFEVIADGERIAERGGNWFTRSFGAGYPDLNGAVEQLEKHG*
Ga0137395_100004763F017372AGGAGMKRLVFGTLLLAGLTTAAFAVQQANNSAQAASSLDRPTEPNFVFDDDGGKAQIVPADFSVAGEKKFHGGAVLKSAQQVSIFLGAGWGDQQFRGRESSLLDITASQGSTHLAELQKHNVRTLRAAPRLEDFSDLSKSRVNDLTIQQKLSDLLQSKAIPAPTAGTVYVIFLAPGITSTLGAHQAGVDYVAYHNFVNLEAGEIHYVVVPFHENADQHSTAATRAFAEAALNPTGQGWF*
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