NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137395_10019864

Scaffold Ga0137395_10019864


Overview

Basic Information
Taxon OID3300012917 Open in IMG/M
Scaffold IDGa0137395_10019864 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023167Metagenome / Metatranscriptome211Y
F104854Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0137395_100198641F023167N/AMQYHRSVDKLFLFVFGPLAFAAVLLVIATGIRRAITRFRARPTPDQLKAVYDSYLRRLLRPQPEAVEKELGKFLPERLLQLYEDHPAVQAAGFQLEKPGWRRKHWQVYCFE
Ga0137395_100198642F104854GGAGGMSDAVAAPVPSRSNPLRKPTHAEATSKLKSGLGILIFGLLVGGALFYFGFKVLGGAALLFFGGGGLLIVLGRKDEVSACPFCGAVLDNLPKPNSDNVPRPVQCKKCWEYSGVQKGFVSPYNPNAMEERPTFRSPLAQSVVWPNGCVQCGAEPTRFDEVGTYNVNKGLLVVGAVRVKTFKLQGVPYCDAHKKAVEMNTGLGNKLYLEWRSLAMMRRYLAANRGRFAE*
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