NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137395_10426350

Scaffold Ga0137395_10426350


Overview

Basic Information
Taxon OID3300012917 Open in IMG/M
Scaffold IDGa0137395_10426350 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002523Metagenome / Metatranscriptome552Y
F004910Metagenome / Metatranscriptome419Y
F005165Metagenome / Metatranscriptome410Y

Sequences

Protein IDFamilyRBSSequence
Ga0137395_104263501F002523N/AVSRLDRIEVEVARPQHDSNPAHNYPSENEVRAILSDFGISEDLIASHLKLLAQIGTGEQLKFPPMDVPQ
Ga0137395_104263502F004910GAGVKTYYGWQTAYRAALLESDWKTMVELVQKAESEIHRRRLELAQDHNGTQEERDALVTALNGLRVLRMDAAAWRERQDLSRF*
Ga0137395_104263503F005165AGGMSDIIGNDAAHPEWRQLCQAALVELNPLKLLERIAHARGVILERIEDGYKKPPTSKQIALLDALSTLDSLRRITERQNGYQSKAS*
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