Scaffold Ga0137396

Basic Information
Taxon OID	3300012918 Open in IMG/M
Scaffold ID	Ga0137396_10000442 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012918 Open in IMG/M

Scaffold ID

Ga0137396_10000442 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19791
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19791

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009950	Metagenome	310	Y
F016650	Metagenome	245	Y
F019810	Metagenome	227	N
F055614	Metagenome	138	Y
F073344	Metagenome	120	Y
F091656	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_100004421	F055614	N/A	VSSEDNDSFEERFSDQARKKALEMFDHQPEHTAEEYDFKEFFSRILEEKDWTDKLESAVVKVRNRFHPRNTDTKLSKELMTLIPDMKEVAKAYDEMTTGYKEFIQNVLDAKQSRASKAKQNVEGGKSTGSMRHSTHRK*
Ga0137396_1000044211	F009950	GAGG	MKITMKADGKRLKPWKIAETVFHVEETIRTEHLELIEKAHLVPQSERKKHDGKDIFEPGEVFFIAMETEKGPTKVAHVHWKPLVDCGEHYRFLNPDGTLGERVTSAIVVRKHFQQ*
Ga0137396_1000044217	F073344	N/A	MFVRVKKVGSRRYAYLVDGVRERRSVRQRTLCYLGPVSKLVSGIPDDTRKKVEKRFQVDWDRMNDQLRRIPLTFEELSMARRNQYATSIRTRQAGFRSQGNLPRAKGELSVLSTLVALRFREMFEQIGEREYRMR*
Ga0137396_100004425	F016650	N/A	MTVQEAVVGTEAGKLQMELRDVFSKILSHARRIDMTLALGDSVEALGQIRELETYLERGLVVLSRPLDHES*
Ga0137396_100004428	F091656	GGCGG	VNDEIERISRFRDFLRVEDKEIFDDLLRQCKHYAPYASTMASVVKEVPLMFSMLFGQHKMIWELEKRLAKLEANQTQQSNSQILAQTLQVSP*
Ga0137396_100004429	F019810	GAG	VIRGSSLLESRVDSGLEIRRILLLTRLKDVSKGMTLPQLVKDCGKVSGWNIPGKTAWEIVQHVVQTLIDDKLVSLGTRFLVTVRGREYLQDPLKWRIDDRTTEELSDKMFWKEIYQVFDKAYHKLRSKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137396_10000442

Overview

Ecosystem & Geography

Associated Families

Sequences