Scaffold Ga0137396

Basic Information
Taxon OID	3300012918 Open in IMG/M
Scaffold ID	Ga0137396_10002760 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012918 Open in IMG/M

Scaffold ID

Ga0137396_10002760 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9727
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9727

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010757	Metagenome	299	Y
F012102	Metagenome / Metatranscriptome	283	N
F012651	Metagenome	278	Y
F034133	Metagenome	175	Y
F036171	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_1000276012	F034133	N/A	MMCAECLRDLQDVVKADDSNLYLCGLCQQKERVHWRILLSSDVEEQALLARILRVIERAYQFRPKEYERPKQN*
Ga0137396_1000276014	F036171	GAG	MDKFSTIRSIKLSYKIDQVENGWTVTTMDGTVFVFPDAKEMAEWFCMVVGVPFQYKKELDPLEEEIRKLTRATASLLA*
Ga0137396_100027604	F012651	N/A	LASTGRFGWFLIGVILGAIILELYNGIVGFVPGWLRTGAVLVRFIIQLVAWFGLMLAVGSVLGWRVIRKDQMHYLLVGFGAIIVTLELLLAIPFGLA*
Ga0137396_100027605	F012102	GAG	LKAAEKSDTWWERANKKLAESTLKTRFTLNKDGKVEVNPPVLPDDYEETRLLFEIVDDVFAMIEEEREEAELDEPDN*
Ga0137396_100027608	F010757	GGAGG	MSSVSQIRIRARLAKPPEYVLVKFPRYEREFFLGYANFILGLILSQEIRELLSNLVSAEGIRSDRAIDLRAMIFPAKQLRRQPSRVLYGSYSHSLAQISLYPLRISKDRIRRDGTELFATRLNDLSIAQRKLIGEIASAAISTLIHEVLHVKFQQRSLARYVEEGMVQRLEKTYMRQWADKLDGVLRSQFSSGIANVSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137396_10002760

Overview

Ecosystem & Geography

Associated Families

Sequences