Scaffold Ga0137396

Basic Information
Taxon OID	3300012918 Open in IMG/M
Scaffold ID	Ga0137396_10005792 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012918 Open in IMG/M

Scaffold ID

Ga0137396_10005792 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7213
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7213

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y
F052525	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_100057922	F020766	AGG	MDLAIGGMVLFTIMVAAGIIPLIMAIKVKVHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLILLIGLGAYYSKVGIA*
Ga0137396_100057923	F001571	GAG	MTGSVPEKTLALIHRVIAPDKEYPKEYAVLVTDRRSIFIRLEKTRSSYWLRGEMKFGTALMTDVIPKTLEDYEQTSVESLIADNANLTIPHEKVTSLVLRKEEPEFRAREFFVWLTMRRQGHRFQVYDFEMGYRQSSNDETTLKFYMVPLGAYFKPRRQTQTRQTILREYATDALGIFQKVLREKSYLHKTIHGTGTVQFVPSNRENGIVGRILE*
Ga0137396_100057924	F034511	AGCAG	LSTSVKKRRRPAQKGVQAVFTPSTNWKGRAQLSLGLLAIGAGTGSWIYTTRALGEFGLGNLIPWNESAAAIFLPVSIPLLIGGVGLCTYFLAMRRTWRASNRIESALYELEALVGQKNGVAGSPLGGGVIPEAKKGGKRSFHLPSFNLGSKALAIALVEAVLLIIIYGGLVREYASNVNMQNWVQANFALGSYLLNYNAVLVLAGLLGILIFQLVPRKLHSRKLQG*
Ga0137396_100057927	F052525	N/A	VSAQILQLPGVSGIGVPKGQLTVYLEADSDDIRNRVREVLKTVSPETDVVFLVTGKFSKQDPD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137396_10005792

Overview

Ecosystem & Geography

Associated Families

Sequences