Scaffold Ga0137396

Basic Information
Taxon OID	3300012918 Open in IMG/M
Scaffold ID	Ga0137396_10006312 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012918 Open in IMG/M

Scaffold ID

Ga0137396_10006312 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6983
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6983

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010455	Metagenome	303	Y
F014368	Metagenome / Metatranscriptome	263	N
F022177	Metagenome / Metatranscriptome	215	Y
F029395	Metagenome	188	Y
F049864	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_100063122	F014368	N/A	MTQIETALKTEGRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRRGQKADSESHGD*
Ga0137396_100063124	F029395	N/A	MDESPEGNGKREGVAYSEAAETDGRLKDLLVGLIDSSKTLDVRVWLDGVYTDIGDEQVRGEWMNDRDVYFKVEGRVDKRNGS*
Ga0137396_100063125	F022177	AGGA	MMENYRWTAYMKLKGHTLARRKEEILDEFDGFVQSLRGLCVDYDIIVKVEGGVPRQLPSTYTPETELTMAREGAGA*
Ga0137396_100063126	F049864	GGAG	LAKFILSVGDGTFKILVSEAKKRDVTVQQLLRAVIVPEWVRENLEANSMNPPSMPSREIAPHLMHQSLYPGQRDQMFQTPVNRLRT*
Ga0137396_100063127	F010455	N/A	MKAVRLGKEFEQAHHERAEKTLLAISEFKRYLDGVEKDLSRMSKKFSNKEIAQGVGFAATGIHEALTYLGIVKKVIEKTERIVAKRNTVSGKETDSSSQSVGDHH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137396_10006312

Overview

Ecosystem & Geography

Associated Families

Sequences