NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137396_10006677

Scaffold Ga0137396_10006677


Overview

Basic Information
Taxon OID3300012918 Open in IMG/M
Scaffold IDGa0137396_10006677 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6822
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005263Metagenome / Metatranscriptome406Y
F023303Metagenome210N
F030711Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0137396_100066771F023303N/ARGLSFSQKKFPLNSGLLLVIALIGTLAISVTSFLLIVLGRGGPSLAGYGVGSMSLFAFLLTIQVLHGKSESKDDFVKKGAVRTAIATSFTVAYLMLLALGLDSGLGLNLNNGLLANFHLVYIFTIGTYFVTASLERIVDQVKGKSSLFG*
Ga0137396_100066772F030711N/AMVVLVMNGLTPYQKILIADARTAFWDWECPRCRRKTRGLVAVKSEFRCVDHVDAKLVLRDNLALIDQELITRILSG*
Ga0137396_100066778F005263AGGMEWGRFVDSFKLVTIDPRLLKLFWSHVTVQEAREMGNRNGNNSVVEFILSYFRKFDLDSVLKIFRVIGAEYSNAYLYSESGDDTNRTIILRHTMGRSASAYYGASLKALCDRLGMELELEESDDQLVCKIRTVVQKSVVQDRSTHSR*
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