NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137396_10017221

Scaffold Ga0137396_10017221


Overview

Basic Information
Taxon OID3300012918 Open in IMG/M
Scaffold IDGa0137396_10017221 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4570
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y
F049864Metagenome / Metatranscriptome146Y
F091702Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0137396_100172213F029395N/AMDESPAGNGKREGPAYSEAREAETDGRLKDLLVGLIDSSKALDVRVWLDGVYTDLGDEQVWADWMNDRDVYFKVEGRVDKRNGS*
Ga0137396_100172214F022177AGGAMMENYSWTAYMKLKGQTLARREEEILDEFDRFVQSLRGVGVDYGIIVRVEGGVPRQLHSLCDIKETESAMAREGDGA*
Ga0137396_100172215F049864GGAGLAKFILSVGDGTFKILASEAKKRDVTVQQLLRAVIVPEWVRENLEPNSMNPLSMPSREIAPHLMHQSLYPGQREQMLQAPVNRLRT*
Ga0137396_100172216F091702N/AMFDGERLPLVLDMGQRELKVYETSDIRILRKPHTPPCDFCGEEFEDGEDAYRLANGKVHYSVPSFVPETTSTFFREECWKKIALKRRKGAVKQPRPER*
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