Scaffold Ga0160422_10171597

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0160422_10171597

Scaffold Ga0160422_10171597

Overview

Basic Information
Taxon OID	3300012919 Open in IMG/M
Scaffold ID	Ga0160422_10171597 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1305
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	The Central Pacific Ocean
Coordinates	Lat. (^o)	10.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004236	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_101715973	F004236	AGGA	MSKSFRQFKKGDFGLREAKASTTHLQYLRAKQANNQHFEVRRYIADKILNDRKLADAYKSLETIHDTYGRVIGNDAITLRQRLEQMLKNDVKRKVLNWDEVWSTL*

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