Basic Information | |
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Taxon OID | 3300012920 Open in IMG/M |
Scaffold ID | Ga0160423_10209779 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1355 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F016691 | Metagenome / Metatranscriptome | 245 | Y |
F079339 | Metagenome / Metatranscriptome | 116 | Y |
F082763 | Metagenome / Metatranscriptome | 113 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0160423_102097791 | F016691 | N/A | LVKIPKEGDYYTIRDIEEYPHLNRAGIRLEELSNPPIELKNGVMHEPSFNIFRFRELEIPPPMELEIREALDNDLGLEIIEEDDGLLRRIRN* |
Ga0160423_102097792 | F082763 | AGGA | MIEQYIPEGKDAIAHVDCREFMYEYIFQLIEEEKIPRKLSAIKYLCMNYRQFVYTNLSMLN* |
Ga0160423_102097795 | F079339 | N/A | MSYLDYRKKVYTELLSKIDKNKDIKSLRKHIVKEINHIEYLKSYE* |
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