Scaffold Ga0137394

Basic Information
Taxon OID	3300012922 Open in IMG/M
Scaffold ID	Ga0137394_10010920 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012922 Open in IMG/M

Scaffold ID

Ga0137394_10010920 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7107
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

7107

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F034694	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137394_100109203	F034694	GGCGG	MLDYLFSLAGILPWRCESCELRFHARLMPFRTFFYAHCGICGNLELQRISAEHVSGVTAILGRILGVPALRCAPCRHKFFSVRPLRHEERPVAAVEGK*
Ga0137394_100109206	F005666	GGAG	MKAPSLRILLPIAALLVASGAIPARAQAPLEPAQMSARTAFYLIWRGVPGPDARKANSLLALWDDPDFAPVHSAIAAGMLSSSAEKSDQRKLTSEQVQEYAALLENSFALGYVSAPVRRNISNGAAMPDAKTPAWNGMFFVYDRTGKEMLLTKAILRMRADAKEPPRISQVIIGGVQVLKAEGKSGVSYWAEHGKYAVSAGERSVMEEILGRLDGKVAGAASLTQSAAYQEAQANLGSGLLEFFLRIPDLEKLAADSKAGSFQVRPLLDAARLDTVHSVSGHITFEGAKTHVQAAILGDAATGTPFDIWAAGQSSPASLAFVPVDAVSYTCAQFNFQGIYDTIKRVARAAFPQAQQDNTDLLDTIAQQKLGMPVPDALGLLTGEFASMQTSASMDSTKQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDATFLKISLGGKQGSAGVAQWNFFNLAVTQDMIFGANRIEALREVLSNRAHASTATGLATVPQFQASRAKFMENLNGLSYFDFQKVDWQALKDRWIEEAKKSPVAKTVSASKDAVLSRAPDWLAQMNLQVVSRHLHYSSSVSWKDSKGIHWDQWVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137394_10010920

Overview

Ecosystem & Geography

Associated Families

Sequences