NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137359_10010405

Scaffold Ga0137359_10010405


Overview

Basic Information
Taxon OID3300012923 Open in IMG/M
Scaffold IDGa0137359_10010405 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7737
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006901Metagenome / Metatranscriptome362Y
F009437Metagenome / Metatranscriptome318Y
F069245Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0137359_100104051F006901GAGGMARLVVGTVFAAALSVSFVAMSCNEATAQERATCSQARSHCGTQGVCQTRYESCMQTGC
Ga0137359_1001040512F009437AGGAGGMSSYASYCQDQVCACARRARLATSPEIVAYCRSLEVRWLRLVAQAQETGGALGHESGQAAILFPDKTATYPVEYGKRAGELIARAVRSLRPTLRQKRRTLVRPQAK*
Ga0137359_100104053F069245N/AMLVLMAFAVLEETALARSYLNCLTKKVTIVDAPKGATWSSSEENFGFWIDEATKIVTLVDGKKLNVRRFDDRWISAVSGDVSYELDRQSGKMALRRQ*
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