NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137419_10000254

Scaffold Ga0137419_10000254


Overview

Basic Information
Taxon OID3300012925 Open in IMG/M
Scaffold IDGa0137419_10000254 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17575
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001571Metagenome / Metatranscriptome669Y
F003458Metagenome485Y

Sequences

Protein IDFamilyRBSSequence
Ga0137419_100002541F001571N/AQRDPSNLAVMYETGNGSYAGPERRLVLIHRVIVPDKEYPREHAILVTDRRSIFIGQKKSRSGFVLRSETRYGTALVTNMQPKTLEDYENMSLGSLVADASNIIVPHSSAISLVMTKGEPEFRLRDLFIWLTMRRQGHKFHVYDFEMNYWDSANQETKIRFYMVPLGVYFKPRRQTRTREAILREYAMDAFKIFQKVLPTRIISS*
Ga0137419_1000025414F003458AGGCGGMTESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPGLFRDNELGASLIAIVGIVSTTLGLWIVNVDFDELRSLFSRRDGWIFTVPLALVAADVYLTLIVLSTNPLIVELNPFVSSAIGIGASALIPFIISYLALSQGLGLLMLRLGSYLFGPLKSYRYLPFVSICGAAGFGPASNLVLFLDPNVGVAAYVIGALGCVMLSAVLFTLVEKVRNDLGKPKFQQP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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