NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137416_10180200

Scaffold Ga0137416_10180200


Overview

Basic Information
Taxon OID3300012927 Open in IMG/M
Scaffold IDGa0137416_10180200 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1680
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048194Metagenome / Metatranscriptome148Y
F074616Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0137416_101802001F048194N/ASDRRFTRLTLRPEPFVTFSRTGTRDEVGCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAQVLNAWVTVTNTRGETLFRARESFYWHAPE*
Ga0137416_101802002F074616GAGMLGGVGPTAAVLVFALAACHGQPARLVAGLADTVVVNNVVPVRMPMHVFDAAGHELPDSGVRFQWASGVPIPISSRGVMKCTNAGDATLRASLGPLVTPFLVRCRPVHDVLGGGVRNFVVGDAPQNLSFAPVDSAGRPVTLFTAGVSYDSTVVTLDGWRIQARATGQTSVDIYIGDSWAHWFVTVYERATTVDEIRPGQGRAVRVRLAGGEMHSLQLPPSPPTYFVTMLPDRDTLRVPRLAIIGANCLRHNFPDGYACFALHGASVVAYHPKQDHPKEAWSGTIAVFREVRP*

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