Scaffold Ga0163110_10243893

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163110_10243893

Scaffold Ga0163110_10243893

Overview

Basic Information
Taxon OID	3300012928 Open in IMG/M
Scaffold ID	Ga0163110_10243893 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1293
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → unclassified Muricauda → Muricauda sp. TMED12	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	2.0416	Long. (^o)	-97.0511	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026719	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_102438932	F026719	AGAAG	MEPYYKLVPYAITEDTKHKILNFAYAPDAFVDISYKISFFKLPSTIQHFNTTGLDCVCQMLKVNESGSTIHKDNNRHNEFDGTWIPRQTVVSFALTENCGSTHFFDDNKKLVCDIDYEGYGAILNTGEHFHNVNFNDTNNERIVFQFCFKESFDQVCKLWNNIKI*

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