NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137407_10825977

Scaffold Ga0137407_10825977


Overview

Basic Information
Taxon OID3300012930 Open in IMG/M
Scaffold IDGa0137407_10825977 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)875
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F007262Metagenome / Metatranscriptome354Y
F021376Metagenome / Metatranscriptome219Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0137407_108259771F021376N/AMWVQHLSSLDFLTYVAFFAVVVAAICRFVPGKAAPVRDEPFPYDELTRHDAFLAKYFVAGGAFLVLGSMHMLLKNLPWT
Ga0137407_108259772F000280GGAGMARWRMPARPLSGYRDVGEGGVRHSRRNVIRAWVILGCLVAIYLTWTLIVYFLEPGLR*
Ga0137407_108259773F090360N/AMAAAPPFVSYSSMSEVVISAADWPFLYASLQAYKAHVQEYPGCQRMEAFVAVQDDGSMRVHCYTTWDTPEQLDAFIEWGYTFERLLGDVGLRHSERTLVMEKLF*
Ga0137407_108259774F007262N/AVDSWDGFTTELAGPATRFFVLLTAILTGFAVTLIVGHLVNGQIF*
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Institute for Fundamental Biomedical Research
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