Basic Information | |
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Taxon OID | 3300012933 Open in IMG/M |
Scaffold ID | Ga0157211_1000030 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39688 |
Total Scaffold Genes | 71 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (73.24%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Kawartha Lakes, Ontario | |||||||
Coordinates | Lat. (o) | 44.33257 | Long. (o) | -78.9405 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031034 | Metagenome / Metatranscriptome | 183 | Y |
F063624 | Metagenome | 129 | Y |
F082586 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157211_100003050 | F031034 | N/A | MAYFKQGNADSQIKVGAGKLFGVFVSSTTSGTFALYDSATASTSDPKIVATVTVAAGTQYVSFPAGLWFSKGLYIDIANTIEYTVAYE* |
Ga0157211_10000308 | F063624 | N/A | MAQSAVGAIRAGCQMLSEGKAEIGKFKKQVEGGIADAKAIYAEVTGIWGWITGLFRGTRPTKSVPEKQIIATNQPSQEAKPVAKKASPEVELSYEEFQARAVHEICENLKIYFEAMRQLKAHCRELEEEALTTERVADSAIDRIEMEWQMNQLSAQLKQSMIYGTPESLGLGALYQEFLRKYDEILEEQEVARALKAKKQRDNAWRHEHRNQILIAKVTYAIATGVGFLELIGLYFTL* |
Ga0157211_10000309 | F082586 | GGA | MREFWFWVAIVTLIIFCLMGLSFAIIHVNKQITKAEALLVRIEEKERKAKLFKEKEE* |
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