NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157211_1001925

Scaffold Ga0157211_1001925


Overview

Basic Information
Taxon OID3300012933 Open in IMG/M
Scaffold IDGa0157211_1001925 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2925
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lakes, Ontario
CoordinatesLat. (o)44.33257Long. (o)-78.9405Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012869Metagenome / Metatranscriptome276Y
F042654Metagenome158Y
F079806Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0157211_10019252F079806AGGMSKSKGKKLSGTATLSYDLSKPEQVFAYKCALKGLDACLMLESLKASTQGYTAYKGMSEGLLADIIQDLSQWEDVKL*
Ga0157211_10019257F042654N/AMLNNNDFIGLERRLWAEGNPLCDELVSTRDELLYLLSEAKKVMEKYSPVLSTLAATDDLDFYREWDNFGDTLDNIAYDLGIEGGTQYKLHEA*
Ga0157211_10019259F012869AGGAMIAIHTKFINPTNSRGARIKAYTASWGDRKGFTATIAFPYEGNEVQSHFEAVKALVSKNKLDWDLSNMRYGDSADGKGFSFCFDCSKV*

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