NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157211_1002584

Scaffold Ga0157211_1002584


Overview

Basic Information
Taxon OID3300012933 Open in IMG/M
Scaffold IDGa0157211_1002584 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2401
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lakes, Ontario
CoordinatesLat. (o)44.33257Long. (o)-78.9405Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066582Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0157211_10025841F066582N/AMTTLVYDRLEMGPIDEIDAAVWSGDLFHNRENIKAFRDMMARWERGLQEAEAIVNEMEAEQ*

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