Scaffold Ga0164243_10014989

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164243_10014989

Scaffold Ga0164243_10014989

Overview

Basic Information
Taxon OID	3300012940 Open in IMG/M
Scaffold ID	Ga0164243_10014989 Open in IMG/M
Source Dataset Name	Organic Plus compost microbial communities from Emeryville, California, USA - Original compost - Organic plus compost (OP)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10750
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location Name	USA: Emeryville, California
Coordinates	Lat. (^o)	37.83	Long. (^o)	-122.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164243_100149899	F003908	GGTGG	MMSLARLSSCVVLALAVGACSSSSPKRPMTTQEMIAADPLPLAVGAKWTYAVTVKRFDPDAGKETTRTLSWTTEVLDAKEANGVTAYRIKGWPTDLAEIDSGDAALPTPTETTVLRSGNNFLFGASAEPSLDGAQGWFSWPVIDGQKICPSAEMVYCWKVSAVDGGYALQFYTGPDEQTYELEPGTGVSRFHYAHHGTTNEVEAKLVEYIKGRN*

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