NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164242_10015264

Scaffold Ga0164242_10015264


Overview

Basic Information
Taxon OID3300012942 Open in IMG/M
Scaffold IDGa0164242_10015264 Open in IMG/M
Source Dataset NameMiracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8047
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002483Metagenome / Metatranscriptome555Y

Sequences

Protein IDFamilyRBSSequence
Ga0164242_100152642F002483N/ALRRRRSARRSAAKGSPAAPARRTPVAPEKRPAAYWVVAGVRLDQELDRLRGLPVFAGGPLPERRPELKVRRASRRPNRVGFAVPSEHRLQVTSYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRTFKATLARAMAEAYGVRGVAARSTLHGAYAEAIERLRAKPQMELDLT*
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