Scaffold Ga0164241_10000396

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164241_10000396

Scaffold Ga0164241_10000396

Overview

Basic Information
Taxon OID	3300012943 Open in IMG/M
Scaffold ID	Ga0164241_10000396 Open in IMG/M
Source Dataset Name	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	84471
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (56.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location Name	USA: Emeryville, California
Coordinates	Lat. (^o)	37.83	Long. (^o)	-122.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028899	Metagenome / Metatranscriptome	190	N
F085908	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164241_100003965	F085908	GAGG	MNVPLRIVNGGEAAIVENQGDHVVVRSSVASPPGSTLSMTFGALPVQVKVRGCKRLGETELPFRIEGRLVSFTRAAREAMFGSEGPSEA*
Ga0164241_1000039664	F028899	GGA	MFCFMFAALKSQMATLPPEGLPLTIPEELWSKIEPEQRERCINAQRVLGAFAGDRDLDLEDLAERLDSAPEDVLGGLHVLDAMALVTTEESDGGPRFHLRALPDEHVRFVGPNGRIQWLFVARPLDPPEVSSESLN*

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