NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137410_10024621

Scaffold Ga0137410_10024621


Overview

Basic Information
Taxon OID3300012944 Open in IMG/M
Scaffold IDGa0137410_10024621 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4170
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007745Metagenome345Y
F018154Metagenome236N

Sequences

Protein IDFamilyRBSSequence
Ga0137410_100246214F007745GGAGGMSRIEGFEAKDPFLAGYKKSLQDVIKGMKKVGPTGLQLLIQEMIRSRWIKDRRASYPYEVAWVFDRREESISGIMKKLEEEGNIEPAGLGRGKKGPSKPYKPRTLRLPKEAVKRPARSSKDV*
Ga0137410_100246215F018154N/AVEAEIAKLRKFQEFLRTDDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLFFSMLFGQHKKIIELEKKILMLETLATKTETTDLVQPSQRPGEKLEAKTVQTN*
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