Scaffold Ga0153798_10287851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153798_10287851

Scaffold Ga0153798_10287851

Overview

Basic Information
Taxon OID	3300012949 Open in IMG/M
Scaffold ID	Ga0153798_10287851 Open in IMG/M
Source Dataset Name	Switchgrass enrichment cultures co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	533
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location
Location Name	USA: Dartmouth College, New Hampshire
Coordinates	Lat. (^o)	43.726	Long. (^o)	-72.1429	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019591	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153798_102878511	F019591	N/A	WCVCWEKLQRVFVARTIALSAPVLYVLQRVSCSYEMIPNASKYYEPDRNISLGSNGVDWLHSLRKILSLRGTNFCMNTSSVCFATSFMQLQNDPKCTQILRNIPKHYFRVNGVDWDCPLRKIRTSLRGTKFCINCTSSPRFAPSFLS*

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