Scaffold Ga0163108_10062294

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163108_10062294

Scaffold Ga0163108_10062294

Overview

Basic Information
Taxon OID	3300012950 Open in IMG/M
Scaffold ID	Ga0163108_10062294 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2369
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	The Central Pacific Ocean
Coordinates	Lat. (^o)	10.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	155
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028162	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_100622942	F028162	AGG	MTHSRKPLDFVKGDLVYFVGYEGPSDRNRLGVVVDVRVGQSHFPLYEVYWIKDKFQSTHTATHIDLLYTTDLIDDEASPKSLLHLKDRVNDRGEGD*

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