NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164300_10313667

Scaffold Ga0164300_10313667


Overview

Basic Information
Taxon OID3300012951 Open in IMG/M
Scaffold IDGa0164300_10313667 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062528Metagenome / Metatranscriptome130N
F097469Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0164300_103136671F097469N/AQGGVGFGWRPYWCNLSARALGLAVLEKQRRLFVIVSGDGIIVTSEEGFRAAYCRRPHHPQLIVRRRTDTDDHEVIAQSWRAANDKARELGWIETPITSVKRRRQ*
Ga0164300_103136672F062528GGAGGMRIPNQVLFRGKRRWPEFDCSEAPLPDMFILQLWMLDGAERRYHLGKRWLRGWHTTHLEQLRKILIAHMNWPPVGSA*

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