NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10023503

Scaffold Ga0163180_10023503


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10023503 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016813Metagenome / Metatranscriptome244Y
F032680Metagenome / Metatranscriptome179Y
F033810Metagenome / Metatranscriptome176N
F051932Metagenome143Y
F103279Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0163180_1002350310F033810N/AMSKSKQIHWNPDTIDHFIFISNYADVDQVLTQVTAFVEADCELQGDDTEKDLVEDLMNKIYERRYE*
Ga0163180_1002350311F032680N/AMSKYVSRIMDEVYDNIRNHFDDKDEKIWFLEELIEELKDELEDIKHQDFNNE*
Ga0163180_1002350313F051932N/AMFKLTEQDYETIVKLRWLQVNELAIKYSNDQEFGAQVRKLIKK*
Ga0163180_100235032F016813N/AMLNLNKLPILNENHEHLIDNSDYSELFERLNYNTEDYLIVYSFIHNIMKVSKELIRYNIEFSHHSCHLSDESYLLINIQQ*
Ga0163180_100235037F103279N/AMVKAIKLICFKAVQKKALKIYAVIMTGVFLSVWIPAMVNVVYQMLKIYGVI*
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Institute for Fundamental Biomedical Research
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