NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10044458

Scaffold Ga0163180_10044458


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10044458 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2648
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012584Metagenome279Y
F016820Metagenome244Y
F018189Metagenome236Y
F073646Metagenome120Y
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0163180_100444581F016820N/AMTKKEFLYIVFSSCGDSVQEIHGVYKDLKGASYGAISALSTLFPKHGDEAKIIRCEILSTEEAELEYDKSKPKELFDK
Ga0163180_100444582F012584N/AMKLKPYLPENTFYLNEDSLPQKHHTDRFGKVMVFRKDVGWTVILLTDAVQYLAMKHTHWTFTPDTPYD*
Ga0163180_100444583F099447N/AMPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDHECEQLLKEYDILSDTTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISTAKKLISATALTPDDYDDQRDFQEAVVQRANVNFHFISITKYIDEMSEYTKGYMPPLRK*
Ga0163180_100444584F073646AGGAGGMLQSEYLELAIELYDIYSAHDIHHKRWLTARELEELKGGPGFLAKIKRMKGKMSELQPVFVDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSQEVTI*
Ga0163180_100444586F018189AGGAGMELSKEQMEKVIYELECNYNSKIFDDENLIIIINLFKNYLNKGETK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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