Scaffold Ga0163179

Basic Information
Taxon OID	3300012953 Open in IMG/M
Scaffold ID	Ga0163179_10001684 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012953 Open in IMG/M

Scaffold ID

Ga0163179_10001684 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15475
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15475

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	34.876	Long. (^o)	-13.1352	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

North Atlantic Ocean

Coordinates

Lat. (^o)

34.876

Long. (^o)

-13.1352

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F026439	Metagenome	198	Y
F054844	Metagenome	139	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100016841	F105146	GGA	MIEVGNIVKSRYTVERHRARIGLVMKVRDGAFENQPLVQIYWPHSRTLGWTPARDMEVVSD*
Ga0163179_1000168412	F014672	GAG	MGAFKPGDLVRIKDGTHQDGMPDHRVGMIVEDGHASENYSGPYTIVFLGSDVTLKFHEMFLEPFTTS*
Ga0163179_1000168413	F009562	AGGAG	MLAIPLIRTDDESNLTPIERTALACEQVITALMMQSTLSDPTITASERETFTTLSVATIIPAEA*
Ga0163179_1000168415	F008590	GGAGG	MQIGDLVTYWYQLSRWREGLSVHVGLVVETGKYTGNRDVKVLWTNEPEPQTECTQHLALVDDISLTT*
Ga0163179_1000168418	F026439	N/A	MYRKKGDYSMASQLDHVTLYADAVQQFEDCILPMIQEDEKNLGHVDIPARSEAWSNFADDLHANEQISDWQVANWVHPDSCND*
Ga0163179_100016843	F054844	GGAGG	VLKVGTLVAFRGSVGLVMGACKKRWAKDDDVYVKWTDESKPKIESSRFLEVINASR*
Ga0163179_100016846	F017285	AGGAG	MSWSGTVTCSHCYQRGHNKRKCPSLTAQIKSQYEGNMLAAASEREKGNENDAEWYESRAELKRQEYMKRTKIDLATGEKVTNKAAKAARMKKVTCGYCKQRGHTRRTCPHVKVDKQIFVEETRRMRIAALESARETGIGLGSMLPIRSTGYDSDGQWRSDILTVRYVQSVLWDDCHANRPTLIVKHIDARKLGAVNQSPHTSRDQITKLVQANDTALRYAAAEGQDLPPSSLIPTLDPPKGWLQPTEQSLEKAIKQAFPTAGNEYQKSRKYDFAYPSGITKEIIKDLGLTEHYDHVNWS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163179_10001684

Overview

Ecosystem & Geography

Associated Families

Sequences