Basic Information | |
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Taxon OID | 3300012953 Open in IMG/M |
Scaffold ID | Ga0163179_10006097 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7975 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001048 | Metagenome / Metatranscriptome | 793 | Y |
F006609 | Metagenome | 369 | Y |
F007052 | Metagenome / Metatranscriptome | 359 | Y |
F025857 | Metagenome / Metatranscriptome | 200 | Y |
F046020 | Metagenome | 152 | N |
Protein ID | Family | RBS | Sequence |
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Ga0163179_1000609710 | F007052 | N/A | MRLIMKKNETYFVAKLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV* |
Ga0163179_1000609713 | F046020 | N/A | MWVSIILFTFSVSAQLDKHFESEKSCWNFYENHPLLYRQIDDSFHKNYPIRLYQNKKHGLVWLTCEKLKHMRGNDVSIFPLNIPLPTPTKK* |
Ga0163179_1000609717 | F006609 | AGGA | MDNELLKRLVAIIARFDQGITEAKGGEGIDKPAIREAKLILSDDGNTSFVYDLNHNEAAEIVGQFSLFKKGEDEVVTPIPLSNLVKEGTIEGIATKDILLN* |
Ga0163179_100060973 | F025857 | N/A | MTLHRIAPGCTFESEDEIVSNPIVGKKISVPTNTPKPYYRTSELDDIPDDFVERMKKFKRVEVRKEERKVETPDGFAVSVAYNKSGYQLIPKEDL* |
Ga0163179_100060978 | F001048 | GGAG | MKIKSTKQFWWRFNYLVKNGAQITITDRTPEMDVKEHNRIGMLVNARVRWELGPEGFMKWDSCGYKDIPTLASAYGIV* |
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